GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.02G139000 [ Glyma.02G139000]	Gm02	14818231	14819742	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.02G139000.4 Glyma.02G139000.4	High	No	879	OG0165300		Get ORF Coding potential... Type: noncoding Potential: -0.733 Folding energies... MFEI: -22.787 AMFE: -0.603 GC content %: 37.770
Gmax_Glyma.02G139000.5 Glyma.02G139000.5	High	No	210	OG0165301		Get ORF Coding potential... Type: noncoding Potential: -0.379 Folding energies... MFEI: -21.857 AMFE: -0.504 GC content %: 43.333

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).