GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.02G143900 [ Glyma.02G143900]	Gm02	15264525	15266282	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.02G143900.2 Glyma.02G143900.2	Low	Yes	1162	OG0165305		Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -22.143 AMFE: -0.577 GC content %: 38.382
Gmax_Glyma.02G143900.3 Glyma.02G143900.3	High	No	252	OG0165306		Get ORF Coding potential... Type: noncoding Potential: -0.662 Folding energies... MFEI: -9.444 AMFE: -0.243 GC content %: 38.889

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Gmax_Glyma.02G143900.2	Rfam	14.6	MIR167_1	1.5e-18

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).