GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.02G204800 [ Glyma.02G204800]	Gm02	40831312	40835092	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.02G204800.1 Glyma.02G204800.1	High	No	947	OG0010705		Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -21.415 AMFE: -0.605 GC content %: 35.375
Gmax_Glyma.02G204800.2 Glyma.02G204800.2	High	No	611	OG0010705		Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -20.409 AMFE: -0.542 GC content %: 37.643
Gmax_Glyma.02G204800.6 Glyma.02G204800.6	High	No	458	OG0010705		Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -17.991 AMFE: -0.463 GC content %: 38.865
Gmax_Glyma.02G204800.7 Glyma.02G204800.7	High	No	712	OG0010705		Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -20.478 AMFE: -0.546 GC content %: 37.500

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).