Gmax Glyma.02G207200

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Gmax_Glyma.02G207200
[ Glyma.02G207200]
Gm02 41026724 41028504 A4v1 Glycine max (Phytozome 13)
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Gmax_Glyma.02G207200.2
Glyma.02G207200.2
Low No 898 OG0017903
Coding potential...
Type: noncoding Potential: -0.744
Folding energies...
MFEI: -26.581 AMFE: -0.676
GC content
%: 39.310
Gmax_Glyma.02G207200.4
Glyma.02G207200.4
Low No 999 OG0017903
Coding potential...
Type: noncoding Potential: -0.762
Folding energies...
MFEI: -25.966 AMFE: -0.683
GC content
%: 38.038
Gmax_Glyma.02G207200.5
Glyma.02G207200.5
Low No 906 OG0017903
Coding potential...
Type: noncoding Potential: -0.048
Folding energies...
MFEI: -27.020 AMFE: -0.690
GC content
%: 39.183


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Gmax_Glyma.02G207200.2  SwissProt 2021-04-01 Q93Y16 2.01e-10
Gmax_Glyma.02G207200.4  SwissProt 2021-04-01 Q93Y16 3.94e-10
Gmax_Glyma.02G207200.5  SwissProt 2021-04-01 Q93Y16 1.57e-11


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Gmax_Glyma.02G207200.png