Gmax Glyma.02G207251

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Gmax_Glyma.02G207251
[ Glyma.02G207251]
Gm02 41031100 41031803 A4v1 Glycine max (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Gmax_Glyma.02G207251.1
Glyma.02G207251.1
Low No 324 OG0031735
Coding potential...
Type: noncoding Potential: -0.523
Folding energies...
MFEI: -26.204 AMFE: -0.674
GC content
%: 38.889
Gmax_Glyma.02G207251.2
Glyma.02G207251.2
Low No 315 OG0031735
Coding potential...
Type: noncoding Potential: -0.547
Folding energies...
MFEI: -25.270 AMFE: -0.647
GC content
%: 39.048
Gmax_Glyma.02G207251.3
Glyma.02G207251.3
Low No 264 OG0165356
Coding potential...
Type: noncoding Potential: -0.681
Folding energies...
MFEI: -27.197 AMFE: -0.659
GC content
%: 41.288


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Gmax_Glyma.02G207251.2  RepBase (RepeatMasker) 2014-01-31 DNA/MULE-MuDR
Gmax_Glyma.02G207251.3  RepBase (RepeatMasker) 2014-01-31 DNA/MULE-MuDR
Gmax_Glyma.02G207251.1  RepBase (RepeatMasker) 2014-01-31 DNA/MULE-MuDR


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Gmax_Glyma.02G207251.png