Gmax Glyma.02G216800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gmax_Glyma.02G216800 [ Glyma.02G216800] |
Gm02 | 42187306 | 42203870 | A4v1 | Glycine max (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gmax_Glyma.02G216800.5 Glyma.02G216800.5 |
Low | No | 330 | OG0007343 | Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -22.061 AMFE: -0.482 GC content %: 45.758 | |
| Gmax_Glyma.02G216800.6 Glyma.02G216800.6 |
High | No | 1440 | OG0007343 | Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -23.222 AMFE: -0.594 GC content %: 39.097 | |
| Gmax_Glyma.02G216800.7 Glyma.02G216800.7 |
High | No | 850 | OG0007343 | Get ORF Coding potential... Type: noncoding Potential: -1.305 Folding energies... MFEI: -24.071 AMFE: -0.561 GC content %: 42.941 | |
| Gmax_Glyma.02G216800.8 Glyma.02G216800.8 |
High | No | 928 | OG0007343 | Get ORF Coding potential... Type: noncoding Potential: -1.311 Folding energies... MFEI: -25.183 AMFE: -0.593 GC content %: 42.457 | |
| Gmax_Glyma.02G216800.9 Glyma.02G216800.9 |
High | No | 1080 | OG0007343 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -22.639 AMFE: -0.605 GC content %: 37.407 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Gmax_Glyma.02G216800.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
