GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.05G147302 [ Glyma.05G147302]	Gm05	34165850	34168608	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.05G147302.1 Glyma.05G147302.1	High	No	641	OG0017920		Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -23.510 AMFE: -0.582 GC content %: 40.406
Gmax_Glyma.05G147302.2 Glyma.05G147302.2	High	No	491	OG0017920		Get ORF Coding potential... Type: noncoding Potential: -0.851 Folding energies... MFEI: -24.196 AMFE: -0.545 GC content %: 44.399

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).