GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.05G193400 [ Glyma.05G193400]	Gm05	37845280	37847710	A4v1	Glycine max (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.05G193400.10 Glyma.05G193400.10	High	No	723	OG0017923		Get ORF Coding potential... Type: noncoding Potential: -0.755 Folding energies... MFEI: -23.928 AMFE: -0.603 GC content %: 39.696
Gmax_Glyma.05G193400.8 Glyma.05G193400.8	High	No	1103	OG0017923		Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -23.953 AMFE: -0.622 GC content %: 38.531
Gmax_Glyma.05G193400.9 Glyma.05G193400.9	High	No	873	OG0017923		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -23.700 AMFE: -0.601 GC content %: 39.404

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).