Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gmax_Glyma.07G088100 [ Glyma.07G088100] |
Gm07 | 8009182 | 8010945 | A4v1 | Glycine max (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gmax_Glyma.07G088100.2 Glyma.07G088100.2 |
Low | No | 1146 | OG0010721 | Get ORF Coding potential... Type: noncoding Potential: -1.379 Folding energies... MFEI: -25.654 AMFE: -0.636 GC content %: 40.314 | |
Gmax_Glyma.07G088100.3 Glyma.07G088100.3 |
High | No | 1131 | OG0010721 | Get ORF Coding potential... Type: noncoding Potential: -1.378 Folding energies... MFEI: -25.950 AMFE: -0.641 GC content %: 40.495 | |
Gmax_Glyma.07G088100.4 Glyma.07G088100.4 |
Low | No | 560 | OG0010721 | Get ORF Coding potential... Type: noncoding Potential: -1.331 Folding energies... MFEI: -26.857 AMFE: -0.588 GC content %: 45.714 | |
Gmax_Glyma.07G088100.5 Glyma.07G088100.5 |
High | No | 1062 | OG0010721 | Get ORF Coding potential... Type: noncoding Potential: -1.375 Folding energies... MFEI: -24.680 AMFE: -0.633 GC content %: 38.983 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gmax_Glyma.07G088100.4 | SwissProt | 2021-04-01 | P49200 | 7.24e-5 |
Gmax_Glyma.07G088100.2 | SwissProt | 2021-04-01 | Q9STY6 | 1.17e-5 |