Gmax Glyma.08G170900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gmax_Glyma.08G170900 [ Glyma.08G170900] |
Gm08 | 13689880 | 13694219 | A4v1 | Glycine max (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gmax_Glyma.08G170900.1 Glyma.08G170900.1 |
High | No | 313 | OG0031834 | Get ORF Coding potential... Type: noncoding Potential: -0.670 Folding energies... MFEI: -25.176 AMFE: -0.584 GC content %: 43.131 | |
| Gmax_Glyma.08G170900.3 Glyma.08G170900.3 |
High | No | 484 | OG0031835 | Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -23.161 AMFE: -0.609 GC content %: 38.017 | |
| Gmax_Glyma.08G170900.4 Glyma.08G170900.4 |
High | No | 309 | OG0031834 | Get ORF Coding potential... Type: noncoding Potential: -0.676 Folding energies... MFEI: -24.304 AMFE: -0.565 GC content %: 43.042 | |
| Gmax_Glyma.08G170900.5 Glyma.08G170900.5 |
High | No | 475 | OG0031835 | Get ORF Coding potential... Type: noncoding Potential: -0.792 Folding energies... MFEI: -22.126 AMFE: -0.587 GC content %: 37.684 | |
| Gmax_Glyma.08G170900.6 Glyma.08G170900.6 |
High | No | 337 | OG0166633 | Get ORF Coding potential... Type: noncoding Potential: -0.772 Folding energies... MFEI: -23.650 AMFE: -0.578 GC content %: 40.950 | |
| Gmax_Glyma.08G170900.7 Glyma.08G170900.7 |
High | No | 334 | OG0166634 | Get ORF Coding potential... Type: noncoding Potential: -0.780 Folding energies... MFEI: -23.263 AMFE: -0.571 GC content %: 40.719 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
