GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.08G231900 [ Glyma.08G231900]	Gm08	19137516	19139345	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.08G231900.2 Glyma.08G231900.2	High	No	601	OG0166679		Get ORF Coding potential... Type: noncoding Potential: -0.813 Folding energies... MFEI: -22.662 AMFE: -0.642 GC content %: 35.275
Gmax_Glyma.08G231900.5 Glyma.08G231900.5	High	No	717	OG0166680		Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -21.702 AMFE: -0.613 GC content %: 35.425
Gmax_Glyma.08G231900.6 Glyma.08G231900.6	High	No	529	OG0166681		Get ORF Coding potential... Type: noncoding Potential: -0.778 Folding energies... MFEI: -22.193 AMFE: -0.593 GC content %: 37.429

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).