GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.09G201900 [ Glyma.09G201900]	Gm09	43494233	43495892	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.09G201900.1 Glyma.09G201900.1	High	No	1144	OG0017939		Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -24.091 AMFE: -0.599 GC content %: 40.210
Gmax_Glyma.09G201900.2 Glyma.09G201900.2	High	No	540	OG0017939		Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -24.722 AMFE: -0.599 GC content %: 41.296
Gmax_Glyma.09G201900.3 Glyma.09G201900.3	High	No	1036	OG0017939		Get ORF Coding potential... Type: noncoding Potential: -0.933 Folding energies... MFEI: -23.562 AMFE: -0.606 GC content %: 38.900

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).