GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.11G168100 [ Glyma.11G168100]	Gm11	22367484	22373817	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.11G168100.1 Glyma.11G168100.1	High	No	1357	OG0007360		Get ORF Coding potential... Type: noncoding Potential: -0.523 Folding energies... MFEI: -23.132 AMFE: -0.624 GC content %: 37.067
Gmax_Glyma.11G168100.3 Glyma.11G168100.3	High	No	1471	OG0007360		Get ORF Coding potential... Type: noncoding Potential: -0.538 Folding energies... MFEI: -23.351 AMFE: -0.642 GC content %: 36.370
Gmax_Glyma.11G168100.4 Glyma.11G168100.4	High	No	1156	OG0007360		Get ORF Coding potential... Type: noncoding Potential: -0.490 Folding energies... MFEI: -23.659 AMFE: -0.620 GC content %: 38.149
Gmax_Glyma.11G168100.5 Glyma.11G168100.5	High	No	1301	OG0007360		Get ORF Coding potential... Type: noncoding Potential: -0.514 Folding energies... MFEI: -23.182 AMFE: -0.626 GC content %: 37.048
Gmax_Glyma.11G168100.6 Glyma.11G168100.6	High	No	1327	OG0007360		Get ORF Coding potential... Type: noncoding Potential: -0.518 Folding energies... MFEI: -22.396 AMFE: -0.600 GC content %: 37.302

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).