GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.13G031000 [ Glyma.13G031000]	Gm13	9207142	9208618	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.13G031000.1 Glyma.13G031000.1	High	No	339	OG0031924		Get ORF Coding potential... Type: noncoding Potential: -0.933 Folding energies... MFEI: -23.215 AMFE: -0.508 GC content %: 45.723
Gmax_Glyma.13G031000.2 Glyma.13G031000.2	High	No	1155	OG0031924		Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -27.281 AMFE: -0.634 GC content %: 43.030

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).