GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.13G314500 [ Glyma.13G314500]	Gm13	40359047	40362840	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.13G314500.1 Glyma.13G314500.1	High	No	795	OG0002465		Get ORF Coding potential... Type: noncoding Potential: -0.575 Folding energies... MFEI: -26.881 AMFE: -0.652 GC content %: 41.258
Gmax_Glyma.13G314500.2 Glyma.13G314500.2	High	No	823	OG0002465		Get ORF Coding potential... Type: noncoding Potential: -0.641 Folding energies... MFEI: -24.107 AMFE: -0.603 GC content %: 39.976
Gmax_Glyma.13G314500.3 Glyma.13G314500.3	High	No	818	OG0002465		Get ORF Coding potential... Type: noncoding Potential: -0.582 Folding energies... MFEI: -26.956 AMFE: -0.645 GC content %: 41.809

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).