GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.13G344600 [ Glyma.13G344600]	Gm13	42924916	42928284	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.13G344600.3 Glyma.13G344600.3	High	No	886	OG0017957		Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -22.325 AMFE: -0.630 GC content %: 35.440
Gmax_Glyma.13G344600.4 Glyma.13G344600.4	High	No	874	OG0017957		Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -23.387 AMFE: -0.614 GC content %: 38.101
Gmax_Glyma.13G344600.5 Glyma.13G344600.5	High	No	851	OG0017957		Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -22.832 AMFE: -0.560 GC content %: 40.776

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).