GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.14G005600 [ Glyma.14G005600]	Gm14	454074	456797	A4v1	Glycine max (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.14G005600.3 Glyma.14G005600.3	High	No	315	OG0168001		Get ORF Coding potential... Type: noncoding Potential: -0.497 Folding energies... MFEI: -27.746 AMFE: -0.633 GC content %: 43.810
Gmax_Glyma.14G005600.4 Glyma.14G005600.4	High	No	288	OG0168002		Get ORF Coding potential... Type: noncoding Potential: -0.494 Folding energies... MFEI: -28.125 AMFE: -0.633 GC content %: 44.444
Gmax_Glyma.14G005600.5 Glyma.14G005600.5	High	No	273	OG0168003		Get ORF Coding potential... Type: noncoding Potential: -0.459 Folding energies... MFEI: -27.875 AMFE: -0.624 GC content %: 44.689

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).