GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.14G039800 [ Glyma.14G039800]	Gm14	2968987	2970245	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.14G039800.1 Glyma.14G039800.1	High	No	1109	OG0017958		Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -23.950 AMFE: -0.667 GC content %: 35.888
Gmax_Glyma.14G039800.2 Glyma.14G039800.2	High	No	1145	OG0017958		Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -24.044 AMFE: -0.671 GC content %: 35.808
Gmax_Glyma.14G039800.3 Glyma.14G039800.3	High	No	633	OG0017958		Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -26.430 AMFE: -0.659 GC content %: 40.126

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).