Gmax Glyma.14G109700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gmax_Glyma.14G109700 [ Glyma.14G109700] |
Gm14 | 12557221 | 12574027 | A4v1 | Glycine max (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gmax_Glyma.14G109700.1 Glyma.14G109700.1 |
Low | No | 977 | OG0003889 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -23.511 AMFE: -0.690 GC content %: 34.084 | |
| Gmax_Glyma.14G109700.4 Glyma.14G109700.4 |
Low | No | 1619 | OG0003889 | Get ORF Coding potential... Type: noncoding Potential: -1.005 Folding energies... MFEI: -21.705 AMFE: -0.723 GC content %: 30.019 | |
| Gmax_Glyma.14G109700.5 Glyma.14G109700.5 |
Low | No | 1076 | OG0003889 | Get ORF Coding potential... Type: noncoding Potential: -1.010 Folding energies... MFEI: -23.113 AMFE: -0.680 GC content %: 34.015 | |
| Gmax_Glyma.14G109700.6 Glyma.14G109700.6 |
Low | No | 1084 | OG0003889 | Get ORF Coding potential... Type: noncoding Potential: -1.011 Folding energies... MFEI: -23.349 AMFE: -0.688 GC content %: 33.948 | |
| Gmax_Glyma.14G109700.7 Glyma.14G109700.7 |
Low | No | 778 | OG0003889 | Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -23.278 AMFE: -0.651 GC content %: 35.733 | |
| Gmax_Glyma.14G109700.8 Glyma.14G109700.8 |
Low | No | 770 | OG0003889 | Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -23.273 AMFE: -0.649 GC content %: 35.844 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Gmax_Glyma.14G109700.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Gmax_Glyma.14G109700.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Gmax_Glyma.14G109700.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Gmax_Glyma.14G109700.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Gmax_Glyma.14G109700.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Gmax_Glyma.14G109700.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
