GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.15G049400 [ Glyma.15G049400]	Gm15	3875821	3883015	A4v1	Glycine max (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.15G049400.1 Glyma.15G049400.1	High	No	627	OG0017961		Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -20.032 AMFE: -0.581 GC content %: 34.450
Gmax_Glyma.15G049400.7 Glyma.15G049400.7	High	No	527	OG0017961		Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -18.065 AMFE: -0.573 GC content %: 31.499
Gmax_Glyma.15G049400.8 Glyma.15G049400.8	High	No	559	OG0017961		Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -17.567 AMFE: -0.528 GC content %: 33.274

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).