Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gmax_Glyma.17G113800 [ Glyma.17G113800] |
Gm17 | 9005286 | 9006444 | A4v1 | Glycine max (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gmax_Glyma.17G113800.1 Glyma.17G113800.1 |
High | No | 1009 | OG0004956 | Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -21.160 AMFE: -0.563 GC content %: 37.562 | |
Gmax_Glyma.17G113800.2 Glyma.17G113800.2 |
Low | No | 845 | OG0004956 | Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -22.308 AMFE: -0.573 GC content %: 38.935 | |
Gmax_Glyma.17G113800.3 Glyma.17G113800.3 |
Low | No | 840 | OG0004956 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -22.345 AMFE: -0.572 GC content %: 39.048 | |
Gmax_Glyma.17G113800.4 Glyma.17G113800.4 |
Low | No | 842 | OG0004956 | Get ORF Coding potential... Type: noncoding Potential: -0.798 Folding energies... MFEI: -22.463 AMFE: -0.577 GC content %: 38.955 | |
Gmax_Glyma.17G113800.5 Glyma.17G113800.5 |
Low | No | 837 | OG0004956 | Get ORF Coding potential... Type: noncoding Potential: -0.781 Folding energies... MFEI: -22.406 AMFE: -0.574 GC content %: 39.068 | |
Gmax_Glyma.17G113800.6 Glyma.17G113800.6 |
High | No | 1007 | OG0004956 | Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -21.513 AMFE: -0.573 GC content %: 37.537 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gmax_Glyma.17G113800.3 | SwissProt | 2021-04-01 | Q1G3V9 | 8.15e-4 |
Gmax_Glyma.17G113800.4 | SwissProt | 2021-04-01 | Q1G3V9 | 1.0e-3 |
Gmax_Glyma.17G113800.5 | SwissProt | 2021-04-01 | Q1G3V9 | 8.85e-4 |
Gmax_Glyma.17G113800.2 | SwissProt | 2021-04-01 | Q1G3V9 | 8.55e-4 |