Gmax Glyma.18G302200
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gmax_Glyma.18G302200 [ Glyma.18G302200] |
Gm18 | 58265621 | 58280040 | A4v1 | Glycine max (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gmax_Glyma.18G302200.2 Glyma.18G302200.2 |
Low | No | 1026 | OG0004959 | Get ORF Coding potential... Type: noncoding Potential: -0.374 Folding energies... MFEI: -26.218 AMFE: -0.669 GC content %: 39.181 | |
| Gmax_Glyma.18G302200.3 Glyma.18G302200.3 |
Low | No | 777 | OG0004959 | Get ORF Coding potential... Type: noncoding Potential: -0.269 Folding energies... MFEI: -27.683 AMFE: -0.685 GC content %: 40.412 | |
| Gmax_Glyma.18G302200.4 Glyma.18G302200.4 |
Low | No | 865 | OG0004959 | Get ORF Coding potential... Type: noncoding Potential: -0.303 Folding energies... MFEI: -25.688 AMFE: -0.663 GC content %: 38.728 | |
| Gmax_Glyma.18G302200.5 Glyma.18G302200.5 |
Low | No | 858 | OG0004959 | Get ORF Coding potential... Type: noncoding Potential: -0.301 Folding energies... MFEI: -26.317 AMFE: -0.664 GC content %: 39.627 | |
| Gmax_Glyma.18G302200.6 Glyma.18G302200.6 |
Low | No | 938 | OG0004959 | Get ORF Coding potential... Type: noncoding Potential: -0.342 Folding energies... MFEI: -27.228 AMFE: -0.670 GC content %: 40.618 | |
| Gmax_Glyma.18G302200.7 Glyma.18G302200.7 |
Low | No | 1019 | OG0004959 | Get ORF Coding potential... Type: noncoding Potential: -0.372 Folding energies... MFEI: -26.565 AMFE: -0.665 GC content %: 39.941 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Gmax_Glyma.18G302200.6 | SwissProt | 2021-04-01 | Q949T8 | 2.24e-12 |
| Gmax_Glyma.18G302200.7 | SwissProt | 2021-04-01 | Q949T8 | 3.61e-6 |
| Gmax_Glyma.18G302200.2 | SwissProt | 2021-04-01 | Q949T8 | 3.14e-12 |
| Gmax_Glyma.18G302200.3 | SwissProt | 2021-04-01 | Q949T8 | 7.7e-13 |
| Gmax_Glyma.18G302200.4 | SwissProt | 2021-04-01 | Q949T8 | 1.23e-12 |
| Gmax_Glyma.18G302200.5 | SwissProt | 2021-04-01 | Q949T8 | 2.33e-6 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
