GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.20G076400 [ Glyma.20G076400]	Gm20	27628012	27632358	A4v1	Glycine max (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.20G076400.22 Glyma.20G076400.22	High	No	348	OG0017981		Get ORF Coding potential... Type: noncoding Potential: -0.069 Folding energies... MFEI: -25.374 AMFE: -0.631 GC content %: 40.230
Gmax_Glyma.20G076400.23 Glyma.20G076400.23	High	No	321	OG0017981		Get ORF Coding potential... Type: noncoding Potential: -0.480 Folding energies... MFEI: -25.078 AMFE: -0.619 GC content %: 40.498
Gmax_Glyma.20G076400.24 Glyma.20G076400.24	High	No	264	OG0017981		Get ORF Coding potential... Type: noncoding Potential: -0.490 Folding energies... MFEI: -24.205 AMFE: -0.597 GC content %: 40.530

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).