Gmax Glyma.U000601
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gmax_Glyma.U000601 [ Glyma.U000601] |
scaffold_105 | 24564 | 26277 | A4v1 | Glycine max (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gmax_Glyma.U000601.1 Glyma.U000601.1 |
High | No | 257 | OG0001344 | Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -21.362 AMFE: -0.513 GC content %: 41.634 | |
| Gmax_Glyma.U000601.2 Glyma.U000601.2 |
High | No | 308 | OG0001344 | Get ORF Coding potential... Type: noncoding Potential: -0.906 Folding energies... MFEI: -24.026 AMFE: -0.574 GC content %: 41.883 | |
| Gmax_Glyma.U000601.3 Glyma.U000601.3 |
High | No | 376 | OG0001344 | Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -25.452 AMFE: -0.613 GC content %: 41.489 | |
| Gmax_Glyma.U000601.4 Glyma.U000601.4 |
High | No | 314 | OG0001344 | Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -23.599 AMFE: -0.566 GC content %: 41.720 | |
| Gmax_Glyma.U000601.5 Glyma.U000601.5 |
High | No | 361 | OG0001344 | Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -25.651 AMFE: -0.609 GC content %: 42.105 | |
| Gmax_Glyma.U000601.6 Glyma.U000601.6 |
High | No | 267 | OG0032067 | Get ORF Coding potential... Type: noncoding Potential: -0.866 Folding energies... MFEI: -25.543 AMFE: -0.568 GC content %: 44.944 | |
| Gmax_Glyma.U000601.7 Glyma.U000601.7 |
High | No | 256 | OG0032067 | Get ORF Coding potential... Type: noncoding Potential: -0.854 Folding energies... MFEI: -25.312 AMFE: -0.559 GC content %: 45.312 | |
| Gmax_Glyma.U000601.8 Glyma.U000601.8 |
High | No | 402 | OG0001344 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -28.632 AMFE: -0.632 GC content %: 45.274 | |
| Gmax_Glyma.U000601.9 Glyma.U000601.9 |
High | No | 396 | OG0001344 | Get ORF Coding potential... Type: noncoding Potential: -0.969 Folding energies... MFEI: -29.066 AMFE: -0.639 GC content %: 45.455 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
