Gmustelinum Gomus.A01G154800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gmustelinum_Gomus.A01G154800 [ Gomus.A01G154800] |
A01 | 71481749 | 71489746 | v1.1 | Gossypium mustelinum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gmustelinum_Gomus.A01G154800.1 Gomus.A01G154800.1 |
Low | No | 1103 | OG0002478 | Get ORF Coding potential... Type: noncoding Potential: -0.800 Folding energies... MFEI: -24.986 AMFE: -0.586 GC content %: 42.611 | |
| Gmustelinum_Gomus.A01G154800.2 Gomus.A01G154800.2 |
Low | No | 1078 | OG0002478 | Get ORF Coding potential... Type: noncoding Potential: -0.796 Folding energies... MFEI: -25.315 AMFE: -0.595 GC content %: 42.579 | |
| Gmustelinum_Gomus.A01G154800.3 Gomus.A01G154800.3 |
Low | No | 1014 | OG0002478 | Get ORF Coding potential... Type: noncoding Potential: -0.784 Folding energies... MFEI: -25.819 AMFE: -0.591 GC content %: 43.688 | |
| Gmustelinum_Gomus.A01G154800.4 Gomus.A01G154800.4 |
Low | No | 962 | OG0002478 | Get ORF Coding potential... Type: noncoding Potential: -0.788 Folding energies... MFEI: -25.738 AMFE: -0.587 GC content %: 43.867 | |
| Gmustelinum_Gomus.A01G154800.5 Gomus.A01G154800.5 |
Low | No | 925 | OG0002478 | Get ORF Coding potential... Type: noncoding Potential: -0.765 Folding energies... MFEI: -24.775 AMFE: -0.550 GC content %: 45.081 | |
| Gmustelinum_Gomus.A01G154800.6 Gomus.A01G154800.6 |
Low | No | 861 | OG0002478 | Get ORF Coding potential... Type: noncoding Potential: -0.749 Folding energies... MFEI: -25.328 AMFE: -0.544 GC content %: 46.574 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Gmustelinum_Gomus.A01G154800.2 | SwissProt | 2021-04-01 | O74347 | 2.71e-6 |
| Gmustelinum_Gomus.A01G154800.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Gmustelinum_Gomus.A01G154800.3 | SwissProt | 2021-04-01 | O74347 | 2.51e-6 |
| Gmustelinum_Gomus.A01G154800.4 | SwissProt | 2021-04-01 | Q8K199 | 5.03e-4 |
| Gmustelinum_Gomus.A01G154800.5 | SwissProt | 2021-04-01 | Q6DHJ6 | 1.78e-6 |
| Gmustelinum_Gomus.A01G154800.6 | SwissProt | 2021-04-01 | Q6DHJ6 | 1.62e-6 |
| Gmustelinum_Gomus.A01G154800.1 | SwissProt | 2021-04-01 | O74347 | 2.45e-6 |
| Gmustelinum_Gomus.A01G154800.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
