GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmustelinum_Gomus.A01G181700 [ Gomus.A01G181700]	A01	108926560	108930766	v1.1	Gossypium mustelinum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmustelinum_Gomus.A01G181700.1 Gomus.A01G181700.1	High	No	1509	OG0011851		Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -20.543 AMFE: -0.608 GC content %: 33.797
Gmustelinum_Gomus.A01G181700.2 Gomus.A01G181700.2	High	No	1522	OG0011851		Get ORF Coding potential... Type: noncoding Potential: -0.823 Folding energies... MFEI: -20.670 AMFE: -0.612 GC content %: 33.771
Gmustelinum_Gomus.A01G181700.3 Gomus.A01G181700.3	High	No	1463	OG0011851		Get ORF Coding potential... Type: noncoding Potential: -0.814 Folding energies... MFEI: -21.394 AMFE: -0.607 GC content %: 35.270
Gmustelinum_Gomus.A01G181700.4 Gomus.A01G181700.4	High	No	1476	OG0011851		Get ORF Coding potential... Type: noncoding Potential: -0.817 Folding energies... MFEI: -21.599 AMFE: -0.613 GC content %: 35.230

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).