GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmustelinum_Gomus.A03G036700 [ Gomus.A03G036700]	A03	4565115	4567633	v1.1	Gossypium mustelinum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmustelinum_Gomus.A03G036700.1 Gomus.A03G036700.1	High	No	1675	OG0000253		Get ORF Coding potential... Type: noncoding Potential: -0.712 Folding energies... MFEI: -29.337 AMFE: -0.726 GC content %: 40.418
Gmustelinum_Gomus.A03G036700.2 Gomus.A03G036700.2	High	No	1240	OG0000253		Get ORF Coding potential... Type: noncoding Potential: -0.712 Folding energies... MFEI: -30.194 AMFE: -0.713 GC content %: 42.339
Gmustelinum_Gomus.A03G036700.3 Gomus.A03G036700.3	High	No	1446	OG0000253		Get ORF Coding potential... Type: noncoding Potential: -0.692 Folding energies... MFEI: -21.763 AMFE: -0.584 GC content %: 37.275
Gmustelinum_Gomus.A03G036700.4 Gomus.A03G036700.4	High	No	531	OG0000253		Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -26.139 AMFE: -0.596 GC content %: 43.879

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).