Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gmustelinum_Gomus.A03G110800 [ Gomus.A03G110800] |
A03 | 51413599 | 51418404 | v1.1 | Gossypium mustelinum (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gmustelinum_Gomus.A03G110800.2 Gomus.A03G110800.2 |
Low | No | 944 | OG0000714 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -23.345 AMFE: -0.565 GC content %: 41.314 | |
Gmustelinum_Gomus.A03G110800.3 Gomus.A03G110800.3 |
Low | No | 889 | OG0000714 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -23.971 AMFE: -0.578 GC content %: 41.507 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gmustelinum_Gomus.A03G110800.2 | SwissProt | 2021-04-01 | Q9FMA3 | 3.35e-5 |
Gmustelinum_Gomus.A03G110800.3 | SwissProt | 2021-04-01 | Q9FMA3 | 2.87e-5 |