GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmustelinum_Gomus.A07G065100 [ Gomus.A07G065100]	A07	7460661	7461857	v1.1	Gossypium mustelinum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmustelinum_Gomus.A07G065100.1 Gomus.A07G065100.1	High	No	949	OG0011858		Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -21.085 AMFE: -0.592 GC content %: 35.616
Gmustelinum_Gomus.A07G065100.2 Gomus.A07G065100.2	High	No	689	OG0011858		Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -23.120 AMFE: -0.590 GC content %: 39.187
Gmustelinum_Gomus.A07G065100.3 Gomus.A07G065100.3	High	No	776	OG0011858		Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -24.085 AMFE: -0.619 GC content %: 38.918
Gmustelinum_Gomus.A07G065100.4 Gomus.A07G065100.4	High	No	591	OG0011858		Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -22.352 AMFE: -0.569 GC content %: 39.255

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).