GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmustelinum_Gomus.A10G148100 [ Gomus.A10G148100]	A10	76297387	76299982	v1.1	Gossypium mustelinum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmustelinum_Gomus.A10G148100.1 Gomus.A10G148100.1	High	No	1424	OG0034350		Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -22.184 AMFE: -0.657 GC content %: 33.778
Gmustelinum_Gomus.A10G148100.2 Gomus.A10G148100.2	High	No	1412	OG0034350		Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -22.018 AMFE: -0.653 GC content %: 33.711
Gmustelinum_Gomus.A10G148100.3 Gomus.A10G148100.3	High	No	454	OG0176810		Get ORF Coding potential... Type: noncoding Potential: -1.005 Folding energies... MFEI: -19.427 AMFE: -0.551 GC content %: 35.242

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).