GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmustelinum_Gomus.A10G268400 [ Gomus.A10G268400]	A10	118240761	118242441	v1.1	Gossypium mustelinum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmustelinum_Gomus.A10G268400.1 Gomus.A10G268400.1	High	No	855	OG0001198		Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -25.589 AMFE: -0.690 GC content %: 37.076
Gmustelinum_Gomus.A10G268400.2 Gomus.A10G268400.2	High	No	784	OG0001198		Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -24.259 AMFE: -0.630 GC content %: 38.520
Gmustelinum_Gomus.A10G268400.3 Gomus.A10G268400.3	High	No	850	OG0001198		Get ORF Coding potential... Type: noncoding Potential: -0.939 Folding energies... MFEI: -25.446 AMFE: -0.687 GC content %: 37.059
Gmustelinum_Gomus.A10G268400.4 Gomus.A10G268400.4	High	No	673	OG0176846		Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -24.322 AMFE: -0.660 GC content %: 36.850

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).