Gmustelinum Gomus.A11G210900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gmustelinum_Gomus.A11G210900 [ Gomus.A11G210900] |
A11 | 34139765 | 34141293 | v1.1 | Gossypium mustelinum (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gmustelinum_Gomus.A11G210900.1 Gomus.A11G210900.1 |
High | No | 1257 | OG0000368 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -28.146 AMFE: -0.806 GC content %: 34.924 | |
| Gmustelinum_Gomus.A11G210900.2 Gomus.A11G210900.2 |
High | No | 1245 | OG0000368 | Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -29.896 AMFE: -0.866 GC content %: 34.538 | |
| Gmustelinum_Gomus.A11G210900.3 Gomus.A11G210900.3 |
High | No | 1256 | OG0000368 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -30.207 AMFE: -0.874 GC content %: 34.554 | |
| Gmustelinum_Gomus.A11G210900.4 Gomus.A11G210900.4 |
High | No | 960 | OG0000368 | Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -30.240 AMFE: -0.869 GC content %: 34.792 | |
| Gmustelinum_Gomus.A11G210900.5 Gomus.A11G210900.5 |
High | No | 1246 | OG0000368 | Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -27.953 AMFE: -0.801 GC content %: 34.912 | |
| Gmustelinum_Gomus.A11G210900.6 Gomus.A11G210900.6 |
High | No | 849 | OG0000368 | Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -30.318 AMFE: -0.825 GC content %: 36.749 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
