Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gmustelinum_Gomus.A12G238000 [ Gomus.A12G238000] |
A12 | 101549468 | 101551360 | v1.1 | Gossypium mustelinum (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gmustelinum_Gomus.A12G238000.2 Gomus.A12G238000.2 |
Low | No | 1518 | OG0019330 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -27.622 AMFE: -0.600 GC content %: 46.047 | |
Gmustelinum_Gomus.A12G238000.3 Gomus.A12G238000.3 |
Low | No | 1537 | OG0019330 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -27.872 AMFE: -0.602 GC content %: 46.324 | |
Gmustelinum_Gomus.A12G238000.5 Gomus.A12G238000.5 |
Low | No | 1459 | OG0019330 | Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -27.601 AMFE: -0.599 GC content %: 46.059 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gmustelinum_Gomus.A12G238000.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
Gmustelinum_Gomus.A12G238000.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
Gmustelinum_Gomus.A12G238000.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |