Gmustelinum Gomus.D01G142400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gmustelinum_Gomus.D01G142400 [ Gomus.D01G142400] |
D01 | 24305854 | 24308053 | v1.1 | Gossypium mustelinum (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gmustelinum_Gomus.D01G142400.1 Gomus.D01G142400.1 |
Low | No | 987 | OG0000508 | Get ORF Coding potential... Type: noncoding Potential: -0.036 Folding energies... MFEI: -23.404 AMFE: -0.561 GC content %: 41.743 | |
| Gmustelinum_Gomus.D01G142400.10 Gomus.D01G142400.10 |
Low | No | 959 | OG0000508 | Get ORF Coding potential... Type: noncoding Potential: -0.028 Folding energies... MFEI: -22.930 AMFE: -0.558 GC content %: 41.084 | |
| Gmustelinum_Gomus.D01G142400.11 Gomus.D01G142400.11 |
Low | No | 907 | OG0000508 | Get ORF Coding potential... Type: noncoding Potential: -0.007 Folding energies... MFEI: -22.778 AMFE: -0.569 GC content %: 40.022 | |
| Gmustelinum_Gomus.D01G142400.15 Gomus.D01G142400.15 |
Low | No | 852 | OG0000508 | Get ORF Coding potential... Type: noncoding Potential: -0.042 Folding energies... MFEI: -22.852 AMFE: -0.552 GC content %: 41.432 | |
| Gmustelinum_Gomus.D01G142400.16 Gomus.D01G142400.16 |
Low | No | 788 | OG0000508 | Get ORF Coding potential... Type: noncoding Potential: -0.010 Folding energies... MFEI: -21.789 AMFE: -0.545 GC content %: 39.975 | |
| Gmustelinum_Gomus.D01G142400.18 Gomus.D01G142400.18 |
Low | No | 969 | OG0000508 | Get ORF Coding potential... Type: noncoding Potential: -0.032 Folding energies... MFEI: -24.799 AMFE: -0.610 GC content %: 40.660 | |
| Gmustelinum_Gomus.D01G142400.2 Gomus.D01G142400.2 |
Low | No | 975 | OG0000508 | Get ORF Coding potential... Type: noncoding Potential: -0.035 Folding energies... MFEI: -22.974 AMFE: -0.552 GC content %: 41.641 | |
| Gmustelinum_Gomus.D01G142400.20 Gomus.D01G142400.20 |
Low | No | 902 | OG0000508 | Get ORF Coding potential... Type: noncoding Potential: -0.003 Folding energies... MFEI: -24.257 AMFE: -0.603 GC content %: 40.244 | |
| Gmustelinum_Gomus.D01G142400.3 Gomus.D01G142400.3 |
Low | No | 982 | OG0000508 | Get ORF Coding potential... Type: noncoding Potential: -0.037 Folding energies... MFEI: -23.248 AMFE: -0.558 GC content %: 41.650 | |
| Gmustelinum_Gomus.D01G142400.4 Gomus.D01G142400.4 |
Low | No | 980 | OG0000508 | Get ORF Coding potential... Type: noncoding Potential: -0.034 Folding energies... MFEI: -23.133 AMFE: -0.554 GC content %: 41.735 | |
| Gmustelinum_Gomus.D01G142400.9 Gomus.D01G142400.9 |
Low | No | 895 | OG0000508 | Get ORF Coding potential... Type: noncoding Potential: -0.001 Folding energies... MFEI: -22.179 AMFE: -0.558 GC content %: 39.777 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Gmustelinum_Gomus.D01G142400.20 | SwissProt | 2021-04-01 | Q9LIS2 | 8.52e-20 |
| Gmustelinum_Gomus.D01G142400.11 | SwissProt | 2021-04-01 | Q9LIS2 | 8.66e-20 |
| Gmustelinum_Gomus.D01G142400.3 | SwissProt | 2021-04-01 | Q9LIS2 | 1.28e-19 |
| Gmustelinum_Gomus.D01G142400.15 | SwissProt | 2021-04-01 | Q9LIS2 | 1.06e-19 |
| Gmustelinum_Gomus.D01G142400.4 | SwissProt | 2021-04-01 | Q9LIS2 | 1.26e-19 |
| Gmustelinum_Gomus.D01G142400.16 | SwissProt | 2021-04-01 | Q9LIS2 | 7.0e-20 |
| Gmustelinum_Gomus.D01G142400.9 | SwissProt | 2021-04-01 | Q9LIS2 | 8.1e-20 |
| Gmustelinum_Gomus.D01G142400.18 | SwissProt | 2021-04-01 | Q9LIS2 | 1.21e-19 |
| Gmustelinum_Gomus.D01G142400.1 | SwissProt | 2021-04-01 | Q9LIS2 | 1.3e-19 |
| Gmustelinum_Gomus.D01G142400.2 | SwissProt | 2021-04-01 | Q9LIS2 | 1.25e-19 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
