GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmustelinum_Gomus.D04G209100 [ Gomus.D04G209100]	D04	55985232	55987592	v1.1	Gossypium mustelinum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmustelinum_Gomus.D04G209100.1 Gomus.D04G209100.1	High	No	723	OG0001718		Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -20.650 AMFE: -0.609 GC content %: 33.887
Gmustelinum_Gomus.D04G209100.2 Gomus.D04G209100.2	High	No	771	OG0001718		Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -20.895 AMFE: -0.615 GC content %: 33.982
Gmustelinum_Gomus.D04G209100.3 Gomus.D04G209100.3	High	No	698	OG0001718		Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -23.367 AMFE: -0.625 GC content %: 37.393

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).