GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmustelinum_Gomus.D07G069400 [ Gomus.D07G069400]	D07	7288972	7290975	v1.1	Gossypium mustelinum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmustelinum_Gomus.D07G069400.1 Gomus.D07G069400.1	High	No	987	OG0000912		Get ORF Coding potential... Type: noncoding Potential: -0.247 Folding energies... MFEI: -24.417 AMFE: -0.629 GC content %: 38.804
Gmustelinum_Gomus.D07G069400.2 Gomus.D07G069400.2	High	No	946	OG0000912		Get ORF Coding potential... Type: noncoding Potential: -0.236 Folding energies... MFEI: -24.017 AMFE: -0.617 GC content %: 38.901
Gmustelinum_Gomus.D07G069400.3 Gomus.D07G069400.3	High	No	935	OG0000912		Get ORF Coding potential... Type: noncoding Potential: -0.232 Folding energies... MFEI: -24.310 AMFE: -0.674 GC content %: 36.043

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).