Gmustelinum Gomus.D07G236100
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gmustelinum_Gomus.D07G236100 [ Gomus.D07G236100] |
D07 | 53121257 | 53124325 | v1.1 | Gossypium mustelinum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gmustelinum_Gomus.D07G236100.1 Gomus.D07G236100.1 |
Low | No | 1221 | OG0000256 | Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -24.701 AMFE: -0.635 GC content %: 38.903 | |
| Gmustelinum_Gomus.D07G236100.2 Gomus.D07G236100.2 |
Low | No | 858 | OG0000256 | Get ORF Coding potential... Type: noncoding Potential: -0.499 Folding energies... MFEI: -27.576 AMFE: -0.659 GC content %: 41.841 | |
| Gmustelinum_Gomus.D07G236100.3 Gomus.D07G236100.3 |
Low | No | 893 | OG0000256 | Get ORF Coding potential... Type: noncoding Potential: -0.509 Folding energies... MFEI: -26.999 AMFE: -0.662 GC content %: 40.761 | |
| Gmustelinum_Gomus.D07G236100.4 Gomus.D07G236100.4 |
Low | No | 1191 | OG0000256 | Get ORF Coding potential... Type: noncoding Potential: -0.574 Folding energies... MFEI: -25.155 AMFE: -0.637 GC content %: 39.463 | |
| Gmustelinum_Gomus.D07G236100.5 Gomus.D07G236100.5 |
High | No | 792 | OG0017734 | Get ORF Coding potential... Type: noncoding Potential: -0.478 Folding energies... MFEI: -27.134 AMFE: -0.659 GC content %: 41.162 | |
| Gmustelinum_Gomus.D07G236100.6 Gomus.D07G236100.6 |
Low | No | 1181 | OG0000256 | Get ORF Coding potential... Type: noncoding Potential: -0.572 Folding energies... MFEI: -25.097 AMFE: -0.636 GC content %: 39.458 | |
| Gmustelinum_Gomus.D07G236100.7 Gomus.D07G236100.7 |
Low | No | 855 | OG0000256 | Get ORF Coding potential... Type: noncoding Potential: -0.498 Folding energies... MFEI: -27.883 AMFE: -0.670 GC content %: 41.637 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Gmustelinum_Gomus.D07G236100.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Gmustelinum_Gomus.D07G236100.3 | SwissProt | 2021-04-01 | F4JZT3 | 8.45e-5 |
| Gmustelinum_Gomus.D07G236100.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Gmustelinum_Gomus.D07G236100.4 | SwissProt | 2021-04-01 | F4JZT3 | 1.23e-4 |
| Gmustelinum_Gomus.D07G236100.6 | SwissProt | 2021-04-01 | F4JZT3 | 1.34e-4 |
| Gmustelinum_Gomus.D07G236100.7 | SwissProt | 2021-04-01 | F4JZT3 | 7.91e-5 |
| Gmustelinum_Gomus.D07G236100.1 | SwissProt | 2021-04-01 | F4JZT3 | 1.27e-4 |
| Gmustelinum_Gomus.D07G236100.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Gmustelinum_Gomus.D07G236100.2 | SwissProt | 2021-04-01 | F4JZT3 | 8.81e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
