Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gmustelinum_Gomus.D08G133200 [ Gomus.D08G133200] |
D08 | 39937037 | 39940932 | v1.1 | Gossypium mustelinum (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gmustelinum_Gomus.D08G133200.10 Gomus.D08G133200.10 |
High | No | 1009 | OG0000918 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -21.824 AMFE: -0.635 GC content %: 34.390 | |
Gmustelinum_Gomus.D08G133200.2 Gomus.D08G133200.2 |
High | No | 1309 | OG0000918 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -21.199 AMFE: -0.650 GC content %: 32.620 | |
Gmustelinum_Gomus.D08G133200.3 Gomus.D08G133200.3 |
Low | No | 1445 | OG0000918 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -22.692 AMFE: -0.668 GC content %: 33.979 | |
Gmustelinum_Gomus.D08G133200.4 Gomus.D08G133200.4 |
Low | No | 1371 | OG0000918 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -22.859 AMFE: -0.677 GC content %: 33.771 | |
Gmustelinum_Gomus.D08G133200.6 Gomus.D08G133200.6 |
High | No | 763 | OG0000918 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -21.442 AMFE: -0.632 GC content %: 33.945 | |
Gmustelinum_Gomus.D08G133200.7 Gomus.D08G133200.7 |
High | No | 908 | OG0000918 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -21.894 AMFE: -0.635 GC content %: 34.471 | |
Gmustelinum_Gomus.D08G133200.8 Gomus.D08G133200.8 |
High | No | 1046 | OG0000918 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -20.966 AMFE: -0.630 GC content %: 33.270 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gmustelinum_Gomus.D08G133200.3 | SwissProt | 2021-04-01 | Q9SDX3 | 5.44e-6 |
Gmustelinum_Gomus.D08G133200.4 | SwissProt | 2021-04-01 | Q9SDX3 | 4.97e-6 |