Gmustelinum Gomus.D11G111700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gmustelinum_Gomus.D11G111700 [ Gomus.D11G111700] |
D11 | 9156913 | 9160556 | v1.1 | Gossypium mustelinum (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gmustelinum_Gomus.D11G111700.2 Gomus.D11G111700.2 |
Low | No | 887 | OG0019357 | Get ORF Coding potential... Type: noncoding Potential: -0.582 Folding energies... MFEI: -23.023 AMFE: -0.599 GC content %: 38.444 | |
| Gmustelinum_Gomus.D11G111700.3 Gomus.D11G111700.3 |
Low | No | 942 | OG0019357 | Get ORF Coding potential... Type: noncoding Potential: -0.598 Folding energies... MFEI: -23.503 AMFE: -0.603 GC content %: 38.960 | |
| Gmustelinum_Gomus.D11G111700.4 Gomus.D11G111700.4 |
High | No | 932 | OG0000926 | Get ORF Coding potential... Type: noncoding Potential: -0.680 Folding energies... MFEI: -22.811 AMFE: -0.596 GC content %: 38.305 | |
| Gmustelinum_Gomus.D11G111700.5 Gomus.D11G111700.5 |
Low | No | 986 | OG0000926 | Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -22.637 AMFE: -0.589 GC content %: 38.438 | |
| Gmustelinum_Gomus.D11G111700.6 Gomus.D11G111700.6 |
Low | No | 989 | OG0000926 | Get ORF Coding potential... Type: noncoding Potential: -0.592 Folding energies... MFEI: -22.801 AMFE: -0.592 GC content %: 38.524 | |
| Gmustelinum_Gomus.D11G111700.7 Gomus.D11G111700.7 |
Low | No | 866 | OG0019357 | Get ORF Coding potential... Type: noncoding Potential: -0.575 Folding energies... MFEI: -23.891 AMFE: -0.598 GC content %: 39.954 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Gmustelinum_Gomus.D11G111700.6 | SwissProt | 2021-04-01 | C6TEX6 | 5.37e-9 |
| Gmustelinum_Gomus.D11G111700.7 | SwissProt | 2021-04-01 | C6TEX6 | 4.39e-9 |
| Gmustelinum_Gomus.D11G111700.2 | SwissProt | 2021-04-01 | C6TEX6 | 4.73e-9 |
| Gmustelinum_Gomus.D11G111700.3 | SwissProt | 2021-04-01 | C6TEX6 | 5.65e-9 |
| Gmustelinum_Gomus.D11G111700.5 | SwissProt | 2021-04-01 | C6TEX6 | 2.53e-9 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
