Gmustelinum Gomus.D12G090600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gmustelinum_Gomus.D12G090600 [ Gomus.D12G090600] |
D12 | 26064022 | 26067221 | v1.1 | Gossypium mustelinum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gmustelinum_Gomus.D12G090600.1 Gomus.D12G090600.1 |
Low | No | 951 | OG0000724 | Get ORF Coding potential... Type: noncoding Potential: -0.557 Folding energies... MFEI: -25.174 AMFE: -0.644 GC content %: 39.117 | |
| Gmustelinum_Gomus.D12G090600.2 Gomus.D12G090600.2 |
Low | No | 924 | OG0000724 | Get ORF Coding potential... Type: noncoding Potential: -0.569 Folding energies... MFEI: -25.195 AMFE: -0.643 GC content %: 39.177 | |
| Gmustelinum_Gomus.D12G090600.3 Gomus.D12G090600.3 |
Low | No | 917 | OG0000724 | Get ORF Coding potential... Type: noncoding Potential: -0.567 Folding energies... MFEI: -25.365 AMFE: -0.646 GC content %: 39.258 | |
| Gmustelinum_Gomus.D12G090600.4 Gomus.D12G090600.4 |
Low | No | 721 | OG0000724 | Get ORF Coding potential... Type: noncoding Potential: -0.498 Folding energies... MFEI: -25.423 AMFE: -0.641 GC content %: 39.667 | |
| Gmustelinum_Gomus.D12G090600.5 Gomus.D12G090600.5 |
Low | No | 1062 | OG0000724 | Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -25.687 AMFE: -0.650 GC content %: 39.548 | |
| Gmustelinum_Gomus.D12G090600.6 Gomus.D12G090600.6 |
Low | No | 1067 | OG0000724 | Get ORF Coding potential... Type: noncoding Potential: -0.808 Folding energies... MFEI: -25.586 AMFE: -0.647 GC content %: 39.550 | |
| Gmustelinum_Gomus.D12G090600.7 Gomus.D12G090600.7 |
Low | No | 833 | OG0000724 | Get ORF Coding potential... Type: noncoding Potential: -0.744 Folding energies... MFEI: -26.134 AMFE: -0.648 GC content %: 40.336 | |
| Gmustelinum_Gomus.D12G090600.8 Gomus.D12G090600.8 |
Low | No | 875 | OG0000724 | Get ORF Coding potential... Type: noncoding Potential: -0.757 Folding energies... MFEI: -26.686 AMFE: -0.671 GC content %: 39.771 | |
| Gmustelinum_Gomus.D12G090600.9 Gomus.D12G090600.9 |
Low | No | 909 | OG0000724 | Get ORF Coding potential... Type: noncoding Potential: -0.671 Folding energies... MFEI: -26.436 AMFE: -0.667 GC content %: 39.604 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Gmustelinum_Gomus.D12G090600.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/Maverick; LTR/Gypsy | |
| Gmustelinum_Gomus.D12G090600.8 | SwissProt | 2021-04-01 | Q9C717 | 3.66e-4 |
| Gmustelinum_Gomus.D12G090600.3 | SwissProt | 2021-04-01 | Q9C717 | 4.31e-4 |
| Gmustelinum_Gomus.D12G090600.9 | SwissProt | 2021-04-01 | Q9C717 | 4.76e-4 |
| Gmustelinum_Gomus.D12G090600.4 | SwissProt | 2021-04-01 | Q9C717 | 2.58e-4 |
| Gmustelinum_Gomus.D12G090600.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/Maverick; LTR/Gypsy | |
| Gmustelinum_Gomus.D12G090600.5 | SwissProt | 2021-04-01 | Q9C717 | 5.19e-4 |
| Gmustelinum_Gomus.D12G090600.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/Maverick; LTR/Gypsy | |
| Gmustelinum_Gomus.D12G090600.6 | SwissProt | 2021-04-01 | Q9C717 | 5.24e-4 |
| Gmustelinum_Gomus.D12G090600.1 | SwissProt | 2021-04-01 | Q9C717 | 5.82e-4 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
