GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Graimondii_B456_001G067600 [ B456_001G067600]	1	6768938	6770825	v6	Gossypium raimondii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Graimondii_KJB08127 KJB08127	High	No	357	OG0034567		Get ORF Coding potential... Type: noncoding Potential: -0.008 Folding energies... MFEI: -24.958 AMFE: -0.568 GC content %: 43.978
Graimondii_KJB08128 KJB08128	High	No	642	OG0034567		Get ORF Coding potential... Type: noncoding Potential: -0.134 Folding energies... MFEI: -25.047 AMFE: -0.633 GC content %: 39.564
Graimondii_KJB08129 KJB08129	High	No	1803	OG0000912		Get ORF Coding potential... Type: noncoding Potential: -0.385 Folding energies... MFEI: -23.688 AMFE: -0.690 GC content %: 34.332

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).