GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Graimondii_B456_001G136100 [ B456_001G136100]	1	17772915	17774907	v6	Gossypium raimondii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Graimondii_KJB09350 KJB09350	High	No	1889	OG0002593		Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -21.805 AMFE: -0.695 GC content %: 31.392
Graimondii_KJB09351 KJB09351	High	No	1786	OG0002593		Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -21.960 AMFE: -0.704 GC content %: 31.187
Graimondii_KJB09352 KJB09352	High	No	315	OG0002593		Get ORF Coding potential... Type: noncoding Potential: -0.872 Folding energies... MFEI: -29.143 AMFE: -0.612 GC content %: 47.619

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).