GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Graimondii_B456_002G054100 [ B456_002G054100]	2	4781792	4784147	v6	Gossypium raimondii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Graimondii_KJB11903 KJB11903	High	No	2111	OG0001045		Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -23.813 AMFE: -0.649 GC content %: 36.712
Graimondii_KJB11904 KJB11904	High	No	2274	OG0001045		Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -23.052 AMFE: -0.640 GC content %: 36.016
Graimondii_KJB11905 KJB11905	High	No	2274	OG0001045		Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -23.052 AMFE: -0.640 GC content %: 36.016
Graimondii_KJB11906 KJB11906	High	No	2281	OG0001045		Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -23.082 AMFE: -0.640 GC content %: 36.081
Graimondii_KJB11907 KJB11907	High	No	1271	OG0001045		Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -23.541 AMFE: -0.646 GC content %: 36.428

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).