Graimondii B456 002G1078001
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Graimondii_B456_002G1078001 [ B456_002G1078001] |
2 | 14658746 | 14659387 | v6 | Gossypium raimondii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Graimondii_KJB13957 KJB13957 |
High | No | 566 | OG0178669 | Get ORF Coding potential... Type: noncoding Potential: -0.612 Folding energies... MFEI: -22.049 AMFE: -0.637 GC content %: 34.629 | |
| Graimondii_KJB13958 KJB13958 |
High | No | 327 | OG0178670 | Get ORF Coding potential... Type: noncoding Potential: -0.473 Folding energies... MFEI: -17.462 AMFE: -0.429 GC content %: 40.673 | |
| Graimondii_KJB13959 KJB13959 |
High | No | 563 | OG0178671 | Get ORF Coding potential... Type: noncoding Potential: -0.611 Folding energies... MFEI: -22.167 AMFE: -0.643 GC content %: 34.458 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
