Graimondii B456 002G230600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Graimondii_B456_002G230600 [ B456_002G230600] |
2 | 58985419 | 58987735 | v6 | Gossypium raimondii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Graimondii_KJB16448 KJB16448 |
High | No | 2036 | OG0001712 | Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -24.013 AMFE: -0.708 GC content %: 33.939 | |
| Graimondii_KJB16449 KJB16449 |
High | No | 2235 | OG0001712 | Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -23.893 AMFE: -0.692 GC content %: 34.541 | |
| Graimondii_KJB16450 KJB16450 |
High | No | 1114 | OG0001712 | Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -24.039 AMFE: -0.690 GC content %: 34.829 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
