Graimondii B456 003G0003002
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Graimondii_B456_003G0003002 [ B456_003G0003002] |
3 | 3624 | 4571 | v6 | Gossypium raimondii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Graimondii_KJB17296 KJB17296 |
High | No | 565 | OG0000411 | Get ORF Coding potential... Type: noncoding Potential: -1.059 Folding energies... MFEI: -22.690 AMFE: -0.599 GC content %: 37.876 | |
| Graimondii_KJB17297 KJB17297 |
High | No | 892 | OG0000411 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -20.404 AMFE: -0.611 GC content %: 33.408 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
