Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Graimondii_B456_003G093000 [ B456_003G093000] |
3 | 28363894 | 28364543 | v6 | Gossypium raimondii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Graimondii_KJB17367 KJB17367 |
Low | No | 506 | OG0034599 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -23.281 AMFE: -0.610 GC content %: 38.142 | |
Graimondii_KJB17368 KJB17368 |
Low | No | 506 | OG0034599 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -23.281 AMFE: -0.610 GC content %: 38.142 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Graimondii_KJB17367 | SwissProt | 2021-04-01 | Q8H183 | 1.2e-5 |
Graimondii_KJB17368 | SwissProt | 2021-04-01 | Q8H183 | 1.2e-5 |