Graimondii B456 003G130300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Graimondii_B456_003G130300 [ B456_003G130300] |
3 | 38400558 | 38403059 | v6 | Gossypium raimondii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Graimondii_KJB20047 KJB20047 |
High | No | 1255 | OG0003050 | Get ORF Coding potential... Type: noncoding Potential: -0.686 Folding energies... MFEI: -25.625 AMFE: -0.654 GC content %: 39.203 | |
| Graimondii_KJB20048 KJB20048 |
High | No | 1410 | OG0003050 | Get ORF Coding potential... Type: noncoding Potential: -0.814 Folding energies... MFEI: -25.809 AMFE: -0.680 GC content %: 37.943 | |
| Graimondii_KJB20050 KJB20050 |
High | No | 306 | OG0003050 | Get ORF Coding potential... Type: noncoding Potential: -0.379 Folding energies... MFEI: -22.647 AMFE: -0.554 GC content %: 40.850 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
