Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Graimondii_B456_004G223700 [ B456_004G223700] |
4 | 55823116 | 55824862 | v6 | Gossypium raimondii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Graimondii_KJB26081 KJB26081 |
Low | No | 1520 | OG0001729 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -23.243 AMFE: -0.662 GC content %: 35.132 | |
Graimondii_KJB26082 KJB26082 |
Low | No | 1316 | OG0001729 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -24.932 AMFE: -0.685 GC content %: 36.398 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Graimondii_KJB26081 | RepBase (RepeatMasker) | 2014-01-31 | LINE/CR1 | |
Graimondii_KJB26082 | RepBase (RepeatMasker) | 2014-01-31 | LINE/CR1 |