GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Graimondii_B456_005G035900 [ B456_005G035900]	5	3408150	3409837	v6	Gossypium raimondii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Graimondii_KJB27540 KJB27540	High	No	1688	OG0003119		Get ORF Coding potential... Type: noncoding Potential: -0.745 Folding energies... MFEI: -23.489 AMFE: -0.621 GC content %: 37.855
Graimondii_KJB27541 KJB27541	High	No	1476	OG0003119		Get ORF Coding potential... Type: noncoding Potential: -0.719 Folding energies... MFEI: -23.896 AMFE: -0.621 GC content %: 38.482
Graimondii_KJB27542 KJB27542	High	No	1681	OG0003119		Get ORF Coding potential... Type: noncoding Potential: -0.744 Folding energies... MFEI: -23.581 AMFE: -0.625 GC content %: 37.716

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).